使用conda安装vep
conda install ensembl-vep vep报错
Compress::Raw::Zlib version 2.201 required--this is only version 2.105 at /xxxx/lib/perl5/site_perl/Compress/Zlib.pm line 11.
BEGIN failed--compilation aborted at /xxxx/lib/perl5/site_perl/Compress/Zlib.pm line 11.
Compilation failed in require at /xxxx/share/ensembl-vep-110.0-0/Bio/EnsEMBL/Variation/ProteinFunctionPredictionMatrix.pm line 83.
BEGIN failed--compilation aborted at /xxxx/share/ensembl-vep-110.0-0/Bio/EnsEMBL/Variation/ProteinFunctionPredictionMatrix.pm line 83.
Compilation failed in require at /xxxx/share/ensembl-vep-110.0-0/Bio/EnsEMBL/Variation/TranscriptVariationAllele.pm line 74.
BEGIN failed--compilation aborted at /xxxx/share/ensembl-vep-110.0-0/Bio/EnsEMBL/Variation/TranscriptVariationAllele.pm line 74.
Compilation failed in require at /xxxx/share/ensembl-vep-110.0-0/Bio/EnsEMBL/Variation/TranscriptVariation.pm line 68.
报错解决
conda update -c conda-forge perl-compress-raw-zlib参考：https://github.com/Ensembl/ensembl-vep/issues/1378
再次vep
vep
#----------------------------------#
# ENSEMBL VARIANT EFFECT PREDICTOR #
#----------------------------------#
Versions:
ensembl-vep : 110.0
Help: dev@ensembl.org , helpdesk@ensembl.org
Twitter: @ensembl
http://www.ensembl.org/info/docs/tools/vep/script/index.html
Usage:
./vep [--cache|--offline|--database] [arguments]
Basic options
=============
--help Display this message and quit
-i | --input_file Input file
-o | --output_file Output file
--force_overwrite Force overwriting of output file
--species [species] Species to use [default: "human"]
--everything Shortcut switch to turn on commonly used options. See web
documentation for details [default: off]
--fork [num_forks] Use forking to improve script runtime
For full option documentation see:
http://www.ensembl.org/info/docs/tools/vep/script/vep_options.html
